Hmm, I really thought it would work. I removed the files and I noticed that the lightmap dss files looked exactly like what my game was looking, all strange. I read some other threads yesterday, but anyway here is what happened. When I tested the game, all the lightmap files were created again exactly like they were before.
I removed the files, and ran cleaner. The only thing maybe is I renamed the level1.zip to 1level1.zip, but I don't think that it is still using that renamed file. But... Here is a image of one of the lightmap dds files.

FPS Creator 1.18.009