Thats a weird bug. The flatten terrain function does 90% the same thing as raise terrain, just uses a different height. I will look into this and get it fixed by the next update which will be later this month.
For now, you can use a combination of BT GetGroundHeight and BT SetPointHeight to flatten the terrain.
[EDIT] Reproduced this bug already. I will make sure that it is fixed by the update later this month.
[EDIT] Fixed! It was a bug when getting the height of the terrain at that point. The RTTMS plugin and BT were using different data types.
Quote: "I want more of a small rectangle then a circle"
How about a command like BT SetAreaHeight TerrainID,x1,y1,x2,y2,height. Which sets the height of all the points in that box. Will that help?
Your signature has been erased by a mod please reduce it to no larger than 600 x 120.