Quote: "because I think there's a bug thats wiping out help files honestly"
There is.

You can reproduce the problem as follows:
1. Create a new project and save it as anything.dbpro in a folder of your choice.
2. Save the dba file as main.dba in the same folder.
3. Make some changes.
4. Open the main Help file page and then hit the save button.
5. Close the project, saving in the usual way.
6. The main.htm help file will have been replaced.
In my opinion this is an editor bug - at the very least the save button should be disabled when the Help file is the active document.
This was reported some time back.

It's anyone's guess when the editor will be next revisited.