Ah, made some progress but still not quite. I did set the permissions to 777 across the board, but I didn\'t know about chown. Just set that and then got hit with a giant wall of errors.
Paul@Paul-PC /cygdrive/c/android/AGK/IDE/templates/template_android
$ /cygdrive/c/android/android-ndk-r6b/ndk-build
SharedLibrary : libtemplate.so
C:/android/AGK/IDE/templates/template_android/obj/local/armeabi/libAGKAndroid.a(AndroidCore.o): In function `global constructors keyed to AndroidCore.cpp\':
AndroidCore.cpp:(.text._GLOBAL__I_AndroidCore.cpp+0x10): undefined reference to `std::ios_base::Init::Init()\'
AndroidCore.cpp:(.text._GLOBAL__I_AndroidCore.cpp+0x34): undefined reference to `std::ios_base::Init::~Init()\'
C:/android/AGK/IDE/templates/template_android/obj/local/armeabi/libAGKAndroid.a(AndroidCore.o): In function `AGK::cImage::DecodeQR(AGK::uString&)\':
AndroidCore.cpp:(.text._ZN3AGK6cImage8DecodeQRERNS_7uStringE+0x854): undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::basic_string(std::string const&)\'
C:/android/AGK/IDE/templates/template_android/obj/local/armeabi/libAGKAndroid.a(zxing.o): In function `Exception\':
C:/TGCSHARED/AGKWorkspace/GDKPro/libprojects/android/jni/../../../zxing/Exception.cpp:27: undefined reference to `std::string::_Rep::_S_empty_rep_storage\'
C:/TGCSHARED/AGKWorkspace/GDKPro/libprojects/android/jni/../../../zxing/Exception.cpp:27: undefined reference to `std::string::_Rep::_S_empty_rep_storage\'
C:/android/AGK/IDE/templates/template_android/obj/local/armeabi/libAGKAndroid.a(zxing.o): In function `~ErrorCorrectionLevel\':
C:/TGCSHARED/AGKWorkspace/GDKPro/libprojects/android/jni/../../../zxing/qrcode/ErrorCorrectionLevel.h:28: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::~basic_string()\'
C:/android/AGK/IDE/templates/template_android/obj/local/armeabi/libAGKAndroid.a(zxing.o): In function `~Mode\':
C:/TGCSHARED/AGKWorkspace/GDKPro/libprojects/android/jni/../../../zxing/qrcode/decoder/Mode.h:30: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::~basic_string()\'
C:/android/AGK/IDE/templates/template_android/obj/local/armeabi/libAGKAndroid.a(zxing.o): In function `~String\':
C:/TGCSHARED/AGKWorkspace/GDKPro/libprojects/android/jni/../../../zxing/common/Str.h:29: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::~basic_string()\'
C:/android/AGK/IDE/templates/template_android/obj/local/armeabi/libAGKAndroid.a(zxing.o): In function `~Code39Reader\':
C:/TGCSHARED/AGKWorkspace/GDKPro/libprojects/android/jni/../../../zxing/oned/Code39Reader.h:34: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::~basic_string()\'
Removed a good chunk from the middle here because the message was too long to post
C:/android/AGK/IDE/templates/template_android/obj/local/armeabi/libAGKAndroid.a(zxing.o): In function `ErrorCorrectionLevel\':
C:/TGCSHARED/AGKWorkspace/GDKPro/libprojects/android/jni/../../../zxing/qrcode/ErrorCorrectionLevel.cpp:32: undefined reference to `std::basic_string<char, std::char_traits<char>, std::allocator<char> >::basic_string(char const*, std::allocator<char> const&)\'
_android
$ ls -l
total 9
-rwxrwxrwx+ 1 Paul None 1582 Oct 28 10:44 AndroidManifest.xml
drwxrwxrwx+ 1 Paul None 0 Oct 28 10:44 jni
drwxrwxrwx+ 1 Paul None 0 Oct 28 10:46 obj
-rwxrwxrwx+ 1 Paul None 360 Oct 28 10:44 project.properties
drwxrwxrwx+ 1 Paul None 0 Oct 28 10:45 src
Paul@Paul-PC /cygdrive/c/android/AGK/IDE/templates/ALtemplate_android
$ /cygdrive/c/android/android-ndk-r6b/ndk-build
Compile++ arm : template <= Core.cpp
C:/android/AGK/IDE/templates/ALtemplate_android/jni/Core.cpp: In function \'void init(void*)\':
C:/android/AGK/IDE/templates/ALtemplate_android/jni/Core.cpp:123: error: \'class app\' has no member named \'g_dwDeviceWidth\'
C:/android/AGK/IDE/templates/ALtemplate_android/jni/Core.cpp:125: error: \'class app\' has no member named \'g_dwDeviceWidth\'
C:/android/AGK/IDE/templates/ALtemplate_android/jni/Core.cpp:126: error: \'class app\' has no member named \'g_dwDeviceHeight\'
/cygdrive/c/android/android-ndk-r6b/build/core/build-binary.mk:220: recipe for target `/cygdrive/c/android/AGK/IDE/templates/ALtemplate_android/obj/local/armeabi/objs/template/Core.o\' failed
make: *** [/cygdrive/c/android/AGK/IDE/templates/ALtemplate_android/obj/local/armeabi/objs/template/Core.o] Error 1