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I've followed all the instructions up until this one:

To compile the tier 2 template app open cygwin and browse to the android template directory (cygwin is case sensitive and does not allow spaces in your project path), for example in my enironment that would be 'cd "/cygdrive/c/android/AGK/IDE/template/template_android" then try to compile the template with the path to the NDK installation e.g. "/cygdrive/c/android/android-ndk-r6b/ndk-build 2> log.txt" errors will be put in log.txt in the template_android folder. This compiles all the C++ code into the native library that will be the main part of the Android application.

I'm not quite sure what I'm supposed to be compiling or how. I guess "make" would be how but there are only folders in the template_android directory.

I figured it out. Thank you.