How did you end up getting the window transparency on the tractor without it cropping/clipping out the interior cabin? Are they separate objects? Some sort of shader?
It's been my observation that an object with overlapping itself with transparency will have the lower layers not visible through the top layer of transparency. Instead here the windows on the other side of the tractor are visible through the side closest to the camera.
I haven't had a lot of problems with this sort of thing except for layering hair on characters. It's all one object and it clips out its own lower layers.