What sort of sound are you after?
I always find that the pickup brand is almost irrelevant after taking into consideration pickup position, plucking position and pick type. Add in the amp, EQ and effects and you can twist a guitar sound into almost anything you want it to be.
Is this to play? or is this just to build a unique guitar?
Generally Seymour Duncan pickups are the favored brand.
however I have bought whole guitars that cost less than one Seymour Duncan pickup and sounded just fine.
you could go the truly unique road and make your own pickup.
Ok, Jokes over, No more eye burn.